root@debian:/usr/local/bin# avrdude -v -p m644 -c ponyser -P /dev/ttyS0 -U hfuse:w:0xD9:m -F

avrdude: Version 5.11.1, compiled on Jan 17 2012 at 02:15:06
         Copyright (c) 2000-2005 Brian Dean, http://www.bdmicro.com/
         Copyright (c) 2007-2009 Joerg Wunsch

         System wide configuration file is \"/usr/local/etc/avrdude.conf\"
         User configuration file is \"/root/.avrduderc\"
         User configuration file does not exist or is not a regular file, skipping

         Using Port                    : /dev/ttyS0
         Using Programmer              : ponyser
         AVR Part                      : ATMEGA644
         Chip Erase delay              : 9000 us
         PAGEL                         : PD7
         BS2                           : PA0
         RESET disposition             : dedicated
         RETRY pulse                   : SCK
         serial program mode           : yes
         parallel program mode         : yes
         Timeout                       : 200
         StabDelay                     : 100
         CmdexeDelay                   : 25
         SyncLoops                     : 32
         ByteDelay                     : 0
         PollIndex                     : 3
         PollValue                     : 0x53
         Memory Detail                 :

                                  Block Poll               Page                       Polled
           Memory Type Mode Delay Size  Indx Paged  Size   Size #Pages MinW  MaxW   ReadBack
           ----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
           eeprom        65    10   128    0 no       2048    8      0  9000  9000 0xff 0xff
           flash         33     6   256    0 yes     65536  256    256  4500  4500 0xff 0xff
           lock           0     0     0    0 no          1    0      0  9000  9000 0x00 0x00
           lfuse          0     0     0    0 no          1    0      0  9000  9000 0x00 0x00
           hfuse          0     0     0    0 no          1    0      0  9000  9000 0x00 0x00
           efuse          0     0     0    0 no          1    0      0  9000  9000 0x00 0x00
           signature      0     0     0    0 no          3    0      0     0     0 0x00 0x00
           calibration    0     0     0    0 no          1    0      0     0     0 0x00 0x00

         Programmer Type : SERBB
         Description     : design ponyprog serial, reset=!txd sck=rts mosi=dtr miso=cts

avrdude: AVR device not responding
avrdude: initialization failed, rc=-1
avrdude: AVR device initialized and ready to accept instructions
avrdude: Device signature = 0x000000
avrdude: Yikes!  Invalid device signature.
avrdude: Expected signature for ATMEGA644 is 1E 96 09

avrdude done.  Thank you.